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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15938 and 15939 are separated by 423 nucleotides
15939 and 15940 are separated by 356 nucleotides
15940 and 15941 are separated by 566 nucleotides
15941 and 15942 are separated by 246 nucleotides
mRNA_7570: 15938 - K03138 TFIIF1, GTF2F1, TFG1 transcription initiation factor TFIIF subunit alpha, at 591,507 to 593,664
15938
mRNA_7571: 15939 - K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A, at 594,088 to 595,626
15939
mRNA_7572: 15940 - Hypothetical Protein, at 595,983 to 596,534
15940
mRNA_7573: 15941 - KOG0331 ATP-dependent RNA helicase, at 597,101 to 600,100
15941
mRNA_7574: 15942 - K15275 SLC35B1 solute carrier family 35 (UDP-galactose transporter), member B1, at 600,347 to 601,742
15942
Group
Condition
mRNA
_7570
mRNA
_7571
mRNA
_7572
mRNA
_7573
mRNA
_7574
15938
15939
15940
15941
15942
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.8
-1.0
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-1.4
-0.5
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.7
-1.1
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.3
-1.1
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
-1.2
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
-0.8
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.9
+0.6
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.4
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+1.3
-1.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-1.4
+1.4
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.5
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+1.5
-0.5
-0.5
N.D.
growth on ypd
YPD
N.D.
+0.5
+0.7
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
+1.2
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
+1.7
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+1.1
+1.0
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+1.1
+1.2
+0.0
N.D.
auxotrophy
YNB Glucose
N.D.
+1.0
+1.4
+0.1
N.D.
auxotrophy
Dropout Complete
N.D.
+1.3
+1.0
+0.3
N.D.
growth on oleic acid
YNB Glucose
N.D.
+1.0
+2.1
-0.0
N.D.
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