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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15939 and 15940 are separated by 356 nucleotides
15940 and 15941 are separated by 566 nucleotides
15941 and 15942 are separated by 246 nucleotides
15942 and 15943 are separated by 572 nucleotides
mRNA_7571: 15939 - K11450 KDM1A, AOF2, LSD1 lysine-specific histone demethylase 1A, at 594,088 to 595,626
15939
mRNA_7572: 15940 - Hypothetical Protein, at 595,983 to 596,534
15940
mRNA_7573: 15941 - KOG0331 ATP-dependent RNA helicase, at 597,101 to 600,100
15941
mRNA_7574: 15942 - K15275 SLC35B1 solute carrier family 35 (UDP-galactose transporter), member B1, at 600,347 to 601,742
15942
mRNA_7575: 15943 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-Tetratricopeptide repeat-PF13371,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 602,315 to 604,765
15943
Group
Condition
mRNA
_7571
mRNA
_7572
mRNA
_7573
mRNA
_7574
mRNA
_7575
15939
15940
15941
15942
15943
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.4
-0.5
+0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-1.0
-0.0
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-1.1
+0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-1.1
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.2
+0.2
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.8
+0.4
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.4
+0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.6
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.4
+1.4
+0.3
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+1.3
-1.1
-0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.3
+0.2
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+1.5
-0.5
-0.5
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+1.2
+0.3
N.D.
-0.1
growth on ypd
YPD
+0.5
+0.7
+0.3
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+1.1
+1.0
+0.0
N.D.
-0.1
auxotrophy
Dropout Complete
+1.3
+1.0
+0.3
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.4
+1.7
+0.1
N.D.
+0.3
auxotrophy
YNB Glucose
+1.0
+1.4
+0.1
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+1.1
+1.2
+0.0
N.D.
+0.3
growth on oleic acid
YNB Glucose
+1.0
+2.1
-0.0
N.D.
+0.1
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