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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15947 and 15948 are separated by 332 nucleotides
15948 and 15949 are separated by 410 nucleotides
15949 and 15950 are separated by 855 nucleotides
15950 and 15951 are separated by 61 nucleotides
mRNA_7579: 15947 - K03952 NDUFA8 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8, at 608,317 to 609,498
15947
mRNA_7580: 15948 - KOG1471 Phosphatidylinositol transfer protein SEC14 and related proteins, at 609,831 to 611,279
15948
mRNA_7581: 15949 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 611,690 to 614,027
15949
mRNA_7582: 15950 - KOG2534 DNA polymerase IV (family X), at 614,883 to 616,136
15950
mRNA_7583: 15951 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 616,198 to 617,544
15951
Group
Condition
mRNA
_7579
mRNA
_7580
mRNA
_7581
mRNA
_7582
mRNA
_7583
15947
15948
15949
15950
15951
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.2
-0.4
growth on ypd
YPD
N.D.
N.D.
+0.5
-0.5
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.0
-0.4
+0.4
auxotrophy
Dropout Complete
N.D.
N.D.
-0.0
+0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.3
-0.2
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.2
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
+0.1
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.4
-0.1
+1.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.1
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.0
+0.2
+0.6
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.0
+0.9
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.0
+1.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
+0.4
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
+0.4
+0.8
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