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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15949 and 15950 are separated by 855 nucleotides
15950 and 15951 are separated by 61 nucleotides
15951 and 15952 are separated by 294 nucleotides
15952 and 15953 are separated by 193 nucleotides
mRNA_7581: 15949 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 611,690 to 614,027
15949
mRNA_7582: 15950 - KOG2534 DNA polymerase IV (family X), at 614,883 to 616,136
15950
mRNA_7583: 15951 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 616,198 to 617,544
15951
mRNA_7584: 15952 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 617,839 to 618,826
15952
mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619,020 to 621,044
15953
Group
Condition
mRNA
_7581
mRNA
_7582
mRNA
_7583
mRNA
_7584
mRNA
_7585
15949
15950
15951
15952
15953
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.1
-0.1
-0.8
-0.9
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
-0.1
-1.7
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.2
+0.0
+0.3
-0.1
auxotrophy
YNB Glucose
+0.1
+0.3
-0.0
-1.0
+0.3
growth on ypd
YPD
+0.5
-0.5
-0.4
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.3
-0.7
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
+0.2
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.4
+0.4
-0.2
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
+0.4
+0.6
-0.5
-0.7
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
-0.4
+0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.0
-0.3
+0.7
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.9
-0.0
-0.4
auxotrophy
Dropout Complete
-0.0
+0.2
-0.1
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
+0.5
-0.4
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
+1.0
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
+0.9
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.3
+0.3
+0.4
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.1
+1.3
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
+0.6
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
+0.8
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
+0.8
+0.2
+0.4
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