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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15952 and 15953 are separated by 193 nucleotides
15953 and 15954 are separated by 128 nucleotides
15954 and 15955 are separated by 111 nucleotides
15955 and 15956 are separated by 206 nucleotides
mRNA_7584: 15952 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 617,839 to 618,826
15952
mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619,020 to 621,044
15953
mRNA_7586: 15954 - HMMPfam-Cytochrome oxidase c assembly-PF14880, at 621,173 to 621,587
15954
mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621,699 to 623,748
15955
mRNA_7588: 15956 - Hypothetical Protein, at 623,955 to 629,387
15956
Group
Condition
mRNA
_7584
mRNA
_7585
mRNA
_7586
mRNA
_7587
mRNA
_7588
15952
15953
15954
15955
15956
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
-0.6
+0.4
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
+0.0
+0.0
+0.4
-1.1
auxotrophy
YNB Glucose 75mM Methionine
-1.7
+0.6
+0.4
+0.1
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.9
-0.0
-0.0
+0.7
growth on oleic acid
YNB Oleic Acid
-0.5
-0.7
-0.2
+0.4
-0.1
auxotrophy
YNB Glucose
-1.0
+0.3
+0.1
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.5
+0.5
-0.5
-1.3
auxotrophy
Dropout Complete
-0.1
+0.5
-0.2
+0.3
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.4
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.4
+0.3
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.3
+0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.6
+0.1
+0.1
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.3
+0.2
+0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
+0.4
+0.8
-0.4
growth on ypd
YPD
-0.2
+0.4
-0.4
-0.1
+0.7
growth on oleic acid
YNB Glucose
-0.3
+0.2
+0.1
+0.5
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.2
-0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.4
-0.0
+0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.4
-0.5
+1.0
+0.8
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
-0.1
+0.4
+0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.1
-0.3
+1.1
+0.3
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