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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15953 and 15954 are separated by 128 nucleotides
15954 and 15955 are separated by 111 nucleotides
15955 and 15956 are separated by 206 nucleotides
15956 and 15957 are separated by 192 nucleotides
mRNA_7585: 15953 - K03650 mnmE, trmE, MSS1 tRNA modification GTPase, at 619,020 to 621,044
15953
mRNA_7586: 15954 - HMMPfam-Cytochrome oxidase c assembly-PF14880, at 621,173 to 621,587
15954
mRNA_7587: 15955 - HMMPfam-Protein of unknown function (DUF2413)-PF10310, at 621,699 to 623,748
15955
mRNA_7588: 15956 - Hypothetical Protein, at 623,955 to 629,387
15956
mRNA_7589: 15957 - K19785 POF1 nicotinamide-nucleotide adenylyltransferase, at 629,580 to 630,504
15957
Group
Condition
mRNA
_7585
mRNA
_7586
mRNA
_7587
mRNA
_7588
mRNA
_7589
15953
15954
15955
15956
15957
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
+0.4
-1.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.6
+0.4
-1.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.0
-0.0
+0.7
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.5
-0.5
-1.3
+0.2
auxotrophy
Dropout Complete
+0.5
-0.2
+0.3
-0.7
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.3
-0.3
-0.5
-0.3
growth on oleic acid
YNB Oleic Acid
-0.7
-0.2
+0.4
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.3
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
+0.1
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.6
+0.4
+0.1
-0.8
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
+0.4
-0.2
+0.4
auxotrophy
YNB Glucose
+0.3
+0.1
+0.2
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.4
-0.2
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
+0.1
+0.2
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.4
+0.8
-0.4
-0.1
growth on ypd
YPD
+0.4
-0.4
-0.1
+0.7
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.5
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
+0.1
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
+0.4
+0.8
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.5
+1.0
+0.8
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
+1.1
+0.3
+0.2
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