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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15962 and 15963 are separated by 252 nucleotides
15963 and 15964 are separated by 56 nucleotides
15964 and 15965 are separated by 173 nucleotides
15965 and 15966 are separated by 237 nucleotides
mRNA_7594: 15962 - K00106 XDH xanthine dehydrogenase/oxidase, at 640,991 to 646,168
15962
mRNA_7595: 15963 - K02151 ATPeV1F, ATP6S14 V-type H+-transporting ATPase subunit F, at 646,421 to 647,106
15963
mRNA_7596: 15964 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 647,163 to 648,088
15964
mRNA_7597: 15965 - Hypothetical Protein, at 648,262 to 649,679
15965
mRNA_7598: 15966 - K01102 PDP pyruvate dehydrogenase phosphatase, at 649,917 to 652,257
15966
Group
Condition
mRNA
_7594
mRNA
_7595
mRNA
_7596
mRNA
_7597
mRNA
_7598
15962
15963
15964
15965
15966
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.3
-1.8
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.3
-1.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
-0.2
-0.6
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.3
-0.9
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.1
-0.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.0
-0.8
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.2
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.1
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
+0.3
-0.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.4
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.2
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.2
-0.7
+0.2
auxotrophy
YNB Glucose
+0.1
N.D.
+0.2
-0.4
+0.0
auxotrophy
Dropout Complete
+0.1
N.D.
+0.4
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.0
+0.2
-0.0
growth on ypd
YPD
-0.2
N.D.
+0.3
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.4
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.5
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.0
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.4
+1.1
-0.3
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.6
+0.1
+0.1
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