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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15963 and 15964 are separated by 56 nucleotides
15964 and 15965 are separated by 173 nucleotides
15965 and 15966 are separated by 237 nucleotides
15966 and 15967 are separated by 272 nucleotides
mRNA_7595: 15963 - K02151 ATPeV1F, ATP6S14 V-type H+-transporting ATPase subunit F, at 646,421 to 647,106
15963
mRNA_7596: 15964 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 647,163 to 648,088
15964
mRNA_7597: 15965 - Hypothetical Protein, at 648,262 to 649,679
15965
mRNA_7598: 15966 - K01102 PDP pyruvate dehydrogenase phosphatase, at 649,917 to 652,257
15966
mRNA_7599: 15967 - K01900 LSC2 succinyl-CoA synthetase beta subunit, at 652,530 to 654,489
15967
Group
Condition
mRNA
_7595
mRNA
_7596
mRNA
_7597
mRNA
_7598
mRNA
_7599
15963
15964
15965
15966
15967
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
-1.8
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
-1.3
-0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
-0.6
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.9
-0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.4
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.7
+0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-0.8
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.4
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.0
-0.4
N.D.
auxotrophy
YNB Glucose
N.D.
+0.2
-0.4
+0.0
N.D.
auxotrophy
Dropout Complete
N.D.
+0.4
-0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.4
-0.3
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.2
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.2
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
+1.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.4
+0.0
N.D.
growth on ypd
YPD
N.D.
+0.3
+0.3
-0.0
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.6
+0.1
+0.1
N.D.
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