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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15964 and 15965 are separated by 173 nucleotides
15965 and 15966 are separated by 237 nucleotides
15966 and 15967 are separated by 272 nucleotides
15967 and 15968 are separated by 300 nucleotides
mRNA_7596: 15964 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 647,163 to 648,088
15964
mRNA_7597: 15965 - Hypothetical Protein, at 648,262 to 649,679
15965
mRNA_7598: 15966 - K01102 PDP pyruvate dehydrogenase phosphatase, at 649,917 to 652,257
15966
mRNA_7599: 15967 - K01900 LSC2 succinyl-CoA synthetase beta subunit, at 652,530 to 654,489
15967
mRNA_7600: 15968 - K00010 iolG myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase, at 654,790 to 656,500
15968
Group
Condition
mRNA
_7596
mRNA
_7597
mRNA
_7598
mRNA
_7599
mRNA
_7600
15964
15965
15966
15967
15968
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.8
-0.0
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.6
-0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-1.3
-0.4
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
+0.3
-0.9
-0.4
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.4
-0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.4
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.8
+0.4
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.7
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.4
-0.2
N.D.
+0.0
auxotrophy
Dropout Complete
+0.4
-0.2
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose
+0.2
-0.4
+0.0
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
-0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.3
-0.2
N.D.
+0.1
growth on ypd
YPD
+0.3
+0.3
-0.0
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
-0.0
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.5
+0.1
-0.3
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+1.1
-0.3
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.6
+0.1
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.4
+0.0
N.D.
+0.4
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