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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15965 and 15966 are separated by 237 nucleotides
15966 and 15967 are separated by 272 nucleotides
15967 and 15968 are separated by 300 nucleotides
15968 and 15969 are separated by 387 nucleotides
mRNA_7597: 15965 - Hypothetical Protein, at 648,262 to 649,679
15965
mRNA_7598: 15966 - K01102 PDP pyruvate dehydrogenase phosphatase, at 649,917 to 652,257
15966
mRNA_7599: 15967 - K01900 LSC2 succinyl-CoA synthetase beta subunit, at 652,530 to 654,489
15967
mRNA_7600: 15968 - K00010 iolG myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase, at 654,790 to 656,500
15968
mRNA_7601: 15969 - K09521 DNAJC1 DnaJ homolog subfamily C member 1, at 656,888 to 658,260
15969
Group
Condition
mRNA
_7597
mRNA
_7598
mRNA
_7599
mRNA
_7600
mRNA
_7601
15965
15966
15967
15968
15969
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
-0.0
N.D.
-0.3
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
-0.4
N.D.
+0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.9
-0.4
N.D.
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.2
N.D.
+0.1
-0.6
ypd buoyancy
40 hrs Median Buoyancy
-0.4
-0.3
N.D.
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
N.D.
+0.0
-0.4
auxotrophy
Dropout Complete
-0.2
-0.3
N.D.
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.3
N.D.
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.4
N.D.
-0.1
-0.3
auxotrophy
YNB Glucose
-0.4
+0.0
N.D.
-0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
N.D.
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
N.D.
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.4
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
N.D.
-0.1
+0.1
growth on ypd
YPD
+0.3
-0.0
N.D.
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.1
N.D.
-0.0
+0.0
growth on oleic acid
YNB Glucose
+0.1
+0.1
N.D.
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.0
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.3
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.0
N.D.
+0.4
+0.0
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