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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15966 and 15967 are separated by 272 nucleotides
15967 and 15968 are separated by 300 nucleotides
15968 and 15969 are separated by 387 nucleotides
15969 and 15970 are separated by 320 nucleotides
mRNA_7598: 15966 - K01102 PDP pyruvate dehydrogenase phosphatase, at 649,917 to 652,257
15966
mRNA_7599: 15967 - K01900 LSC2 succinyl-CoA synthetase beta subunit, at 652,530 to 654,489
15967
mRNA_7600: 15968 - K00010 iolG myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase, at 654,790 to 656,500
15968
mRNA_7601: 15969 - K09521 DNAJC1 DnaJ homolog subfamily C member 1, at 656,888 to 658,260
15969
mRNA_7602: 15970 - Hypothetical Protein, at 658,581 to 659,564
15970
Group
Condition
mRNA
_7598
mRNA
_7599
mRNA
_7600
mRNA
_7601
mRNA
_7602
15966
15967
15968
15969
15970
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-0.3
-0.8
-0.3
growth on ypd
YPD
-0.0
N.D.
-0.5
-0.0
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
-0.1
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.1
-0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.0
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.1
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.1
-0.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
N.D.
+0.3
-0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.0
-0.4
+0.5
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.2
-0.0
+0.2
auxotrophy
Dropout Complete
-0.3
N.D.
-0.1
-0.3
+0.7
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+0.0
+0.0
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
-0.3
+0.3
+0.4
auxotrophy
YNB Glucose
+0.0
N.D.
-0.0
-0.4
+0.6
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
+0.0
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.4
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.1
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+0.1
+0.2
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.0
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.0
+0.0
+0.7
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