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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15972 and 15973 are separated by 249 nucleotides
15973 and 15974 are separated by 417 nucleotides
15974 and 15975 are separated by 244 nucleotides
15975 and 15976 are separated by 276 nucleotides
mRNA_7604: 15972 - K09549 PFDN2 prefoldin subunit 2, at 661,569 to 662,288
15972
mRNA_7605: 15973 - K03941 NDUFS8 NADH dehydrogenase (ubiquinone) Fe-S protein 8, at 662,538 to 663,838
15973
mRNA_7606: 15974 - Hypothetical Protein, at 664,256 to 665,164
15974
mRNA_7607: 15975 - BLAST UPF0428 CXorf56-like protein, putative [Rhizoctonia s..., at 665,409 to 666,288
15975
mRNA_7608: 15976 - K10847 XPA DNA-repair protein complementing XP-A cells, at 666,565 to 667,853
15976
Group
Condition
mRNA
_7604
mRNA
_7605
mRNA
_7606
mRNA
_7607
mRNA
_7608
15972
15973
15974
15975
15976
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.7
N.D.
-0.2
-0.4
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-1.5
N.D.
-0.3
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-1.6
N.D.
-0.3
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
N.D.
-0.0
-0.6
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.2
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.6
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
N.D.
-0.3
-0.3
+0.3
growth on ricinoleic acid
YNB Glucose
-0.6
N.D.
-0.2
+0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.5
N.D.
-0.2
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
-0.2
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.1
+0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
-0.1
+0.4
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
-0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.1
+0.3
-0.2
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
-0.1
+0.0
-0.2
growth on ypd
YPD
+0.0
N.D.
-0.3
-0.1
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+1.2
N.D.
-0.1
+0.2
-0.9
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
-0.1
+0.1
+0.3
auxotrophy
Dropout Complete
+0.6
N.D.
-0.5
+0.3
+0.2
auxotrophy
YNB Glucose
+0.5
N.D.
-0.2
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.6
N.D.
-0.1
+0.2
+0.1
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