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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15974 and 15975 are separated by 244 nucleotides
15975 and 15976 are separated by 276 nucleotides
15976 and 15977 are separated by 65 nucleotides
15977 and 15978 are separated by 353 nucleotides
mRNA_7606: 15974 - Hypothetical Protein, at 664,256 to 665,164
15974
mRNA_7607: 15975 - BLAST UPF0428 CXorf56-like protein, putative [Rhizoctonia s..., at 665,409 to 666,288
15975
mRNA_7608: 15976 - K10847 XPA DNA-repair protein complementing XP-A cells, at 666,565 to 667,853
15976
mRNA_7609: 15977 - KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1), at 667,919 to 668,964
15977
mRNA_7610: 15978 - KOG0548 Molecular co-chaperone STI1, at 669,318 to 671,371
15978
Group
Condition
mRNA
_7606
mRNA
_7607
mRNA
_7608
mRNA
_7609
mRNA
_7610
15974
15975
15976
15977
15978
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.4
-0.2
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.6
-0.1
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
-0.0
N.D.
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.2
-0.9
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.2
-0.4
N.D.
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.5
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.3
+0.3
N.D.
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
-0.2
N.D.
-0.4
auxotrophy
Dropout Complete
-0.5
+0.3
+0.2
N.D.
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.4
+0.1
N.D.
+0.3
growth on ypd
YPD
-0.3
-0.1
+0.6
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.4
-0.1
N.D.
-0.1
auxotrophy
YNB Glucose
-0.2
+0.4
+0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
-0.0
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.3
N.D.
+0.3
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