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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15977 and 15978 are separated by 353 nucleotides
15978 and 15979 are separated by 361 nucleotides
15979 and 15980 are separated by 550 nucleotides
15980 and 15981 are separated by 255 nucleotides
mRNA_7609: 15977 - KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1), at 667,919 to 668,964
15977
mRNA_7610: 15978 - KOG0548 Molecular co-chaperone STI1, at 669,318 to 671,371
15978
mRNA_7611: 15979 - KOG4779 Predicted membrane protein, at 671,733 to 672,150
15979
mRNA_7612: 15980 - Hypothetical Protein, at 672,701 to 674,569
15980
mRNA_7613: 15981 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 674,825 to 677,007
15981
Group
Condition
mRNA
_7609
mRNA
_7610
mRNA
_7611
mRNA
_7612
mRNA
_7613
15977
15978
15979
15980
15981
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.0
N.D.
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.6
N.D.
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.7
N.D.
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.5
N.D.
-0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
N.D.
-0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.6
N.D.
+0.0
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
N.D.
-0.0
-0.0
auxotrophy
Dropout Complete
N.D.
-0.4
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
N.D.
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
N.D.
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
N.D.
-0.0
+0.0
growth on ypd
YPD
N.D.
-0.3
N.D.
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
N.D.
+0.5
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose
N.D.
-0.0
N.D.
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
N.D.
+0.4
+0.2
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