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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15981 and 15982 are separated by 478 nucleotides
15982 and 15983 are separated by 303 nucleotides
15983 and 15984 are separated by 659 nucleotides
15984 and 15985 are separated by 597 nucleotides
mRNA_7613: 15981 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 674,825 to 677,007
15981
mRNA_7614: 15982 - K14156 CHK choline/ethanolamine kinase, at 677,486 to 680,218
15982
mRNA_7615: 15983 - K06678 YCG1, CAPG condensin complex subunit 3, at 680,522 to 684,221
15983
mRNA_7616: 15984 - K00706 E2.4.1.34 1,3-beta-glucan synthase, at 684,881 to 690,807
15984
mRNA_7617: 15985 - Hypothetical Protein, at 691,405 to 692,628
15985
Group
Condition
mRNA
_7613
mRNA
_7614
mRNA
_7615
mRNA
_7616
mRNA
_7617
15981
15982
15983
15984
15985
growth on ypd
YPD
+0.1
-0.4
-0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.4
-0.0
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.0
-0.3
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.5
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.6
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.1
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
-0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.0
+0.1
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.0
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.5
-0.1
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.4
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
+0.2
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.7
-0.0
N.D.
-0.1
auxotrophy
YNB Glucose
+0.1
+0.3
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.4
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.2
N.D.
+0.2
auxotrophy
Dropout Complete
-0.0
+0.3
+0.2
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.5
+0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.7
+0.3
N.D.
+0.2
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