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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15991 and 15992 are separated by 626 nucleotides
15992 and 15993 are separated by 177 nucleotides
15993 and 15994 are separated by 469 nucleotides
15994 and 15995 are separated by 172 nucleotides
mRNA_7623: 15991 - K19564 CTR, HNM1 choline transport protein, at 704,159 to 706,103
15991
mRNA_7624: 15992 - KOG1535 Predicted fumarylacetoacetate hydralase, at 706,730 to 707,973
15992
mRNA_7625: 15993 - HMMPfam-Hypoxia induced protein conserved region-PF04588,ProSiteProfiles-HIG1 domain profile.-PS51503, at 708,151 to 709,093
15993
mRNA_7626: 15994 - K00273 DAO, aao D-amino-acid oxidase, at 709,563 to 711,029
15994
mRNA_7627: 15995 - K01273 DPEP membrane dipeptidase, at 711,202 to 712,775
15995
Group
Condition
mRNA
_7623
mRNA
_7624
mRNA
_7625
mRNA
_7626
mRNA
_7627
15991
15992
15993
15994
15995
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.5
-0.6
-0.4
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.2
-0.3
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
-0.2
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
-0.4
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.4
+0.4
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.3
-0.2
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.2
+0.0
+0.0
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.1
-0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.5
+0.2
+0.4
auxotrophy
Dropout Complete
+0.1
-0.2
+0.3
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
-0.5
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.2
+0.5
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-0.4
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
+0.3
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
-0.6
+0.0
+0.8
growth on ricinoleic acid
YNB Glucose
+0.3
-0.3
+0.4
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.0
+0.4
-0.2
+0.3
growth on oleic acid
YNB Glucose
+0.1
+0.1
+0.7
-0.0
+0.0
auxotrophy
YNB Glucose
+0.0
-0.2
+0.6
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.3
+0.4
+0.5
+0.1
growth on ypd
YPD
-0.0
-0.1
+0.2
-0.0
+1.0
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mRNA_7625
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