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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15993 and 15994 are separated by 469 nucleotides
15994 and 15995 are separated by 172 nucleotides
15995 and 15996 are separated by 87 nucleotides
15996 and 15997 are separated by 129 nucleotides
mRNA_7625: 15993 - HMMPfam-Hypoxia induced protein conserved region-PF04588,ProSiteProfiles-HIG1 domain profile.-PS51503, at 708,151 to 709,093
15993
mRNA_7626: 15994 - K00273 DAO, aao D-amino-acid oxidase, at 709,563 to 711,029
15994
mRNA_7627: 15995 - K01273 DPEP membrane dipeptidase, at 711,202 to 712,775
15995
mRNA_7628: 15996 - KOG1721 FOG Zn-finger, at 712,863 to 715,455
15996
mRNA_7629: 15997 - K20474 RINT1, TIP20 RAD50-interacting protein 1, at 715,585 to 720,215
15997
Group
Condition
mRNA
_7625
mRNA
_7626
mRNA
_7627
mRNA
_7628
mRNA
_7629
15993
15994
15995
15996
15997
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.4
-0.5
-0.5
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.4
+0.2
-0.6
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.0
+0.3
-0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.1
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
-0.4
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.2
+0.0
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
+0.0
-0.3
-0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
+0.0
-0.1
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.1
+0.4
-0.1
+0.1
auxotrophy
Dropout Complete
+0.3
+0.1
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+0.0
+0.8
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
+0.3
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
+0.4
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.2
+0.4
+0.3
+0.0
growth on ypd
YPD
+0.2
-0.0
+1.0
-0.6
+0.0
growth on oleic acid
YNB Glucose
+0.7
-0.0
+0.0
-0.1
+0.2
auxotrophy
YNB Glucose
+0.6
-0.0
+0.5
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.3
-0.1
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.4
-0.1
+0.4
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.5
+0.1
+0.0
+0.1
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