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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15994 and 15995 are separated by 172 nucleotides
15995 and 15996 are separated by 87 nucleotides
15996 and 15997 are separated by 129 nucleotides
15997 and 15998 are separated by 105 nucleotides
mRNA_7626: 15994 - K00273 DAO, aao D-amino-acid oxidase, at 709,563 to 711,029
15994
mRNA_7627: 15995 - K01273 DPEP membrane dipeptidase, at 711,202 to 712,775
15995
mRNA_7628: 15996 - KOG1721 FOG Zn-finger, at 712,863 to 715,455
15996
mRNA_7629: 15997 - K20474 RINT1, TIP20 RAD50-interacting protein 1, at 715,585 to 720,215
15997
mRNA_7630: 15998 - K11353 NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13, at 720,321 to 721,070
15998
Group
Condition
mRNA
_7626
mRNA
_7627
mRNA
_7628
mRNA
_7629
mRNA
_7630
15994
15995
15996
15997
15998
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.5
-0.5
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.2
-0.6
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.3
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
-0.3
-0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.2
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
-0.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.4
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.3
-0.7
-0.1
N.D.
auxotrophy
Dropout Complete
+0.1
-0.1
-0.1
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
-0.2
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
-0.0
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.4
-0.2
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.0
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose
-0.0
+0.5
+0.0
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.4
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
+0.1
+0.0
N.D.
growth on ypd
YPD
-0.0
+1.0
-0.6
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.8
+0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.4
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.1
+0.0
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
+0.3
+0.0
N.D.
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