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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15995 and 15996 are separated by 87 nucleotides
15996 and 15997 are separated by 129 nucleotides
15997 and 15998 are separated by 105 nucleotides
15998 and 15999 are separated by 121 nucleotides
mRNA_7627: 15995 - K01273 DPEP membrane dipeptidase, at 711,202 to 712,775
15995
mRNA_7628: 15996 - KOG1721 FOG Zn-finger, at 712,863 to 715,455
15996
mRNA_7629: 15997 - K20474 RINT1, TIP20 RAD50-interacting protein 1, at 715,585 to 720,215
15997
mRNA_7630: 15998 - K11353 NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13, at 720,321 to 721,070
15998
mRNA_7631: 15999 - KOG0226 RNA-binding proteins, at 721,192 to 722,141
15999
Group
Condition
mRNA
_7627
mRNA
_7628
mRNA
_7629
mRNA
_7630
mRNA
_7631
15995
15996
15997
15998
15999
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.5
+0.0
N.D.
-1.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.2
-0.3
N.D.
-3.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.7
-0.1
N.D.
-1.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.6
-0.1
N.D.
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.2
+0.0
N.D.
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
-0.4
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.2
-0.2
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.2
-0.1
N.D.
-1.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
-0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.3
N.D.
+0.4
auxotrophy
Dropout Complete
-0.1
-0.1
-0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose
+0.5
+0.0
-0.3
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.0
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.2
N.D.
-0.2
growth on ricinoleic acid
YNB Glucose
+0.4
+0.2
+0.2
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.1
N.D.
-0.0
growth on ypd
YPD
+1.0
-0.6
+0.0
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.3
+0.0
N.D.
+0.1
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