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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15996 and 15997 are separated by 129 nucleotides
15997 and 15998 are separated by 105 nucleotides
15998 and 15999 are separated by 121 nucleotides
15999 and 16000 are separated by 801 nucleotides
mRNA_7628: 15996 - KOG1721 FOG Zn-finger, at 712,863 to 715,455
15996
mRNA_7629: 15997 - K20474 RINT1, TIP20 RAD50-interacting protein 1, at 715,585 to 720,215
15997
mRNA_7630: 15998 - K11353 NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13, at 720,321 to 721,070
15998
mRNA_7631: 15999 - KOG0226 RNA-binding proteins, at 721,192 to 722,141
15999
mRNA_7632: 16000 - KOG0383 Predicted helicase, at 722,943 to 730,457
16000
Group
Condition
mRNA
_7628
mRNA
_7629
mRNA
_7630
mRNA
_7631
mRNA
_7632
15996
15997
15998
15999
16000
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
N.D.
-3.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.1
N.D.
-1.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.0
N.D.
-1.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
N.D.
-0.4
-1.0
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.1
N.D.
-1.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
N.D.
-1.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
N.D.
-1.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.4
N.D.
-0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.3
N.D.
-0.1
+0.1
growth on ypd
YPD
-0.6
+0.0
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
+0.0
-0.3
N.D.
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.0
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
N.D.
-0.7
-0.0
auxotrophy
Dropout Complete
-0.1
-0.3
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
N.D.
+0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.0
N.D.
+0.1
-0.5
growth on oleic acid
YNB Glucose
-0.1
+0.2
N.D.
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
N.D.
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
N.D.
+0.1
+0.2
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