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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
15997 and 15998 are separated by 105 nucleotides
15998 and 15999 are separated by 121 nucleotides
15999 and 16000 are separated by 801 nucleotides
16000 and 16001 are separated by 171 nucleotides
mRNA_7629: 15997 - K20474 RINT1, TIP20 RAD50-interacting protein 1, at 715,585 to 720,215
15997
mRNA_7630: 15998 - K11353 NDUFA13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13, at 720,321 to 721,070
15998
mRNA_7631: 15999 - KOG0226 RNA-binding proteins, at 721,192 to 722,141
15999
mRNA_7632: 16000 - KOG0383 Predicted helicase, at 722,943 to 730,457
16000
mRNA_7633: 16001 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 730,629 to 733,694
16001
Group
Condition
mRNA
_7629
mRNA
_7630
mRNA
_7631
mRNA
_7632
mRNA
_7633
15997
15998
15999
16000
16001
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
-3.0
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-1.3
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
-0.4
-1.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-1.1
-0.2
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
-1.4
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-1.0
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
-0.6
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
-1.1
-0.2
+0.2
auxotrophy
YNB Glucose
-0.3
N.D.
-0.3
+0.1
-0.2
auxotrophy
Dropout Complete
-0.3
N.D.
+0.2
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.2
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.7
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
-0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.1
-0.5
+0.2
growth on ypd
YPD
+0.0
N.D.
+0.2
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.2
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.4
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.0
+0.0
-0.1
growth on oleic acid
YNB Glucose
+0.2
N.D.
-0.2
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.1
+0.2
+0.1
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