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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16001 and 16002 are separated by 460 nucleotides
16002 and 16003 are separated by 451 nucleotides
16003 and 16004 are separated by 945 nucleotides
16004 and 16005 are separated by 106 nucleotides
mRNA_7633: 16001 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 730,629 to 733,694
16001
mRNA_7634: 16002 - HMMPfam-Protein of unknown function (DUF1264)-PF06884, at 734,155 to 735,362
16002
mRNA_7635: 16003 - K02865 RP-L10Ae, RPL10A large subunit ribosomal protein L10Ae, at 735,814 to 737,148
16003
mRNA_7636: 16004 - Hypothetical Protein, at 738,094 to 740,941
16004
mRNA_7637: 16005 - K12197 CHMP1, VPS46, DID2 charged multivesicular body protein 1, at 741,048 to 741,985
16005
Group
Condition
mRNA
_7633
mRNA
_7634
mRNA
_7635
mRNA
_7636
mRNA
_7637
16001
16002
16003
16004
16005
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
N.D.
-0.1
-2.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-1.1
N.D.
+0.2
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.5
N.D.
+0.1
-3.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.0
N.D.
-0.3
-1.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
N.D.
+0.0
-1.6
auxotrophy
YNB Glucose
-0.2
+0.2
N.D.
-0.1
-1.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.0
N.D.
+0.2
-2.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.5
N.D.
-0.2
-0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
N.D.
+0.1
-2.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
-0.0
-1.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
N.D.
-0.1
-1.6
growth on oleic acid
YNB Glucose
+0.2
-0.4
N.D.
+0.4
-1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
N.D.
-0.2
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.1
N.D.
-0.3
-0.1
auxotrophy
Dropout Complete
-0.3
+0.5
N.D.
-0.2
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.3
N.D.
+0.2
+0.1
growth on ypd
YPD
-0.2
-0.1
N.D.
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.0
-0.0
N.D.
+0.3
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
N.D.
-0.1
+1.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
-0.0
+1.1
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