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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16007 and 16008 are separated by 397 nucleotides
16008 and 16009 are separated by 250 nucleotides
16009 and 16010 are separated by 192 nucleotides
16010 and 16011 are separated by 427 nucleotides
mRNA_7639: 16007 - K11095 SNRPC U1 small nuclear ribonucleoprotein C, at 745,269 to 745,635
16007
mRNA_7640: 16008 - K12622 LSM3 U6 snRNA-associated Sm-like protein LSm3, at 746,033 to 746,457
16008
mRNA_7641: 16009 - Hypothetical Protein, at 746,708 to 747,858
16009
mRNA_7642: 16010 - K06943 NOG1 nucleolar GTP-binding protein, at 748,051 to 750,365
16010
mRNA_7643: 16011 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 750,793 to 753,754
16011
Group
Condition
mRNA
_7639
mRNA
_7640
mRNA
_7641
mRNA
_7642
mRNA
_7643
16007
16008
16009
16010
16011
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
N.D.
-0.5
growth on ypd
YPD
N.D.
N.D.
-0.4
N.D.
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.3
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.2
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
N.D.
+0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
N.D.
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.6
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.4
N.D.
+0.7
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.8
N.D.
+0.4
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