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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16013 and 16014 are separated by 38 nucleotides
16014 and 16015 are separated by 66 nucleotides
16015 and 16016 are separated by 647 nucleotides
16016 and 16017 are separated by 412 nucleotides
mRNA_7645: 16013 - K04794 PTH2 peptidyl-tRNA hydrolase, PTH2 family, at 756,752 to 757,515
16013
mRNA_7646: 16014 - Hypothetical Protein, at 757,554 to 759,024
16014
mRNA_7647: 16015 - KOG2741 Dimeric dihydrodiol dehydrogenase, at 759,091 to 760,573
16015
mRNA_7648: 16016 - K01705 LYS4 homoaconitate hydratase, at 761,221 to 763,593
16016
mRNA_7649: 16017 - K13346 PEX10 peroxin-10, at 764,006 to 765,401
16017
Group
Condition
mRNA
_7645
mRNA
_7646
mRNA
_7647
mRNA
_7648
mRNA
_7649
16013
16014
16015
16016
16017
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-0.0
-4.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.2
-3.7
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.3
+0.0
-4.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
+0.1
-3.5
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
+0.3
-3.8
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.2
-3.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.6
+0.7
-3.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
+0.3
-3.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.8
-1.5
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
-1.1
-1.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.3
-3.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
-0.4
-1.7
N.D.
auxotrophy
YNB Glucose
N.D.
+0.2
+0.9
-3.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.5
-3.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.4
-1.5
N.D.
auxotrophy
Dropout Complete
N.D.
+0.2
+0.4
-0.7
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.4
-0.3
N.D.
growth on ypd
YPD
N.D.
-0.3
+0.5
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.3
+0.8
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.6
+1.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
+1.3
+0.5
N.D.
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