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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16017 and 16018 are separated by 169 nucleotides
16018 and 16019 are separated by 725 nucleotides
16019 and 16020 are separated by 316 nucleotides
16020 and 16021 are separated by 276 nucleotides
mRNA_7649: 16017 - K13346 PEX10 peroxin-10, at 764,006 to 765,401
16017
mRNA_7650: 16018 - K08008 NOX, GP91 NADPH oxidase, at 765,571 to 768,508
16018
mRNA_7651: 16019 - K03671 trxA thioredoxin 1, at 769,234 to 769,814
16019
mRNA_7652: 16020 - HMMPfam-XPG I-region-PF00867,PRINTS-Xeroderma pigmentosum group G/yeast RAD superfamily signature-PR00853,SMART-Xeroderma pigmentosum G I-region-SM00484,SUPERFAMILY--SSF47807,SUPERFAMILY--SSF88723, at 770,131 to 772,818
16020
mRNA_7653: 16021 - K15216 RRN3, TIFIA RNA polymerase I-specific transcription initiation factor RRN3, at 773,095 to 776,030
16021
Group
Condition
mRNA
_7649
mRNA
_7650
mRNA
_7651
mRNA
_7652
mRNA
_7653
16017
16018
16019
16020
16021
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.7
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.7
-0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-0.7
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
-0.7
+0.1
N.D.
auxotrophy
Dropout Complete
N.D.
+0.1
-0.4
-0.3
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
-0.5
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.6
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.6
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.4
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.6
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.4
-0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.3
-0.1
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.5
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.6
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.7
+0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.2
-0.1
N.D.
growth on ypd
YPD
N.D.
+0.0
+0.1
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-0.3
+0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.5
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.0
+0.9
-0.0
N.D.
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