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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16025 and 16026 are separated by 170 nucleotides
16026 and 16027 are separated by 94 nucleotides
16027 and 16028 are separated by 529 nucleotides
16028 and 16029 are separated by 242 nucleotides
mRNA_7657: 16025 - KOG2743 Cobalamin synthesis protein, at 781,222 to 782,891
16025
mRNA_7658: 16026 - KOG1398 Uncharacterized conserved protein, at 783,062 to 785,466
16026
mRNA_7659: 16027 - BLAST acetylornithine transaminase [Moesziomyces antarc..., at 785,561 to 786,043
16027
mRNA_7660: 16028 - Interpro RNA polymerase II transcription mediator complex subunit 9 0, at 786,573 to 787,086
16028
mRNA_7661: 16029 - KOG3337 Protein similar to predicted member of the intramitochondrial sorting protein family, at 787,329 to 788,508
16029
Group
Condition
mRNA
_7657
mRNA
_7658
mRNA
_7659
mRNA
_7660
mRNA
_7661
16025
16026
16027
16028
16029
facs on lipid accumulation
Sorted High BODIPY Gate
-2.6
-0.3
-1.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.1
-4.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
-3.3
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.1
-0.8
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-1.0
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-1.0
+0.6
-1.2
N.D.
N.D.
growth on ypd
YPD
-1.6
+0.3
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.9
+0.3
N.D.
N.D.
auxotrophy
Dropout Complete
+0.2
-0.3
-0.6
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.5
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.5
+0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.2
-1.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.6
+0.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.5
+0.1
-0.8
N.D.
N.D.
auxotrophy
YNB Glucose
+0.1
+0.3
-0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.3
-0.7
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
-0.2
+0.0
N.D.
N.D.
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