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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16030 and 16031 are separated by 455 nucleotides
16031 and 16032 are separated by 1376 nucleotides
16032 and 16033 are separated by 207 nucleotides
16033 and 16034 are separated by 207 nucleotides
mRNA_7662: 16030 - K13519 LPT1, ALE1 lysophospholipid acyltransferase, at 788,706 to 790,925
16030
mRNA_7663: 16031 - K03305 TC.POT proton-dependent oligopeptide transporter, POT family, at 791,381 to 793,587
16031
mRNA_7664: 16032 - K07904 RAB11A Ras-related protein Rab-11A, at 794,964 to 796,238
16032
mRNA_7665: 16033 - K13119 FAM50, XAP5 protein FAM50, at 796,446 to 798,090
16033
mRNA_7666: 16034 - K20184 VPS41 vacuolar protein sorting-associated protein 41, at 798,298 to 802,330
16034
Group
Condition
mRNA
_7662
mRNA
_7663
mRNA
_7664
mRNA
_7665
mRNA
_7666
16030
16031
16032
16033
16034
ypd buoyancy
40 hrs No Buoyancy Separation
-1.6
+0.2
N.D.
N.D.
-2.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.6
N.D.
N.D.
-2.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.8
N.D.
N.D.
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
-0.8
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
N.D.
N.D.
-1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.4
N.D.
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
-0.6
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.4
N.D.
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.4
N.D.
N.D.
-0.6
growth on ricinoleic acid
YNB Glucose
-0.7
-0.3
N.D.
N.D.
+1.0
growth on oleic acid
YNB Glucose
-0.4
-0.2
N.D.
N.D.
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
N.D.
N.D.
+0.3
auxotrophy
YNB Glucose
-0.4
-0.2
N.D.
N.D.
+1.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.4
N.D.
N.D.
-0.1
auxotrophy
Dropout Complete
-0.8
-0.5
N.D.
N.D.
+1.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.0
N.D.
N.D.
+0.6
growth on oleic acid
YNB Oleic Acid
-0.5
-0.4
N.D.
N.D.
+1.5
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.2
N.D.
N.D.
+1.4
auxotrophy
YNB Glucose 75mM Methionine
-0.5
-0.3
N.D.
N.D.
+1.9
growth on ypd
YPD
+1.2
-0.0
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.0
N.D.
N.D.
+1.8
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