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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16031 and 16032 are separated by 1376 nucleotides
16032 and 16033 are separated by 207 nucleotides
16033 and 16034 are separated by 207 nucleotides
16034 and 16035 are separated by 143 nucleotides
mRNA_7663: 16031 - K03305 TC.POT proton-dependent oligopeptide transporter, POT family, at 791,381 to 793,587
16031
mRNA_7664: 16032 - K07904 RAB11A Ras-related protein Rab-11A, at 794,964 to 796,238
16032
mRNA_7665: 16033 - K13119 FAM50, XAP5 protein FAM50, at 796,446 to 798,090
16033
mRNA_7666: 16034 - K20184 VPS41 vacuolar protein sorting-associated protein 41, at 798,298 to 802,330
16034
mRNA_7667: 16035 - Hypothetical Protein, at 802,474 to 802,850
16035
Group
Condition
mRNA
_7663
mRNA
_7664
mRNA
_7665
mRNA
_7666
mRNA
_7667
16031
16032
16033
16034
16035
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
-2.7
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
N.D.
N.D.
-1.3
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
N.D.
-2.0
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
N.D.
N.D.
-1.8
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.8
N.D.
N.D.
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
N.D.
N.D.
+0.4
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
N.D.
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
N.D.
N.D.
-0.6
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.4
N.D.
N.D.
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
N.D.
-0.4
+0.9
auxotrophy
Dropout Complete
-0.5
N.D.
N.D.
+1.7
-0.9
auxotrophy
YNB Glucose
-0.2
N.D.
N.D.
+1.1
-0.5
growth on oleic acid
YNB Glucose
-0.2
N.D.
N.D.
+0.7
-0.1
growth on ypd
YPD
-0.0
N.D.
N.D.
+0.0
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
N.D.
+1.4
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
N.D.
+1.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
N.D.
+1.9
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
N.D.
+0.6
+0.7
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
N.D.
+1.5
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
N.D.
+1.8
+1.0
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