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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16038 and 16039 are separated by 207 nucleotides
16039 and 16040 are separated by 127 nucleotides
16040 and 16041 are separated by 317 nucleotides
16041 and 16042 are separated by 414 nucleotides
mRNA_7670: 16038 - Hypothetical Protein, at 806,647 to 807,421
16038
mRNA_7671: 16039 - SUPERFAMILY--SSF56112, at 807,629 to 808,363
16039
mRNA_7672: 16040 - Hypothetical Protein, at 808,491 to 811,190
16040
mRNA_7673: 16041 - K14778 DDX49, DBP8 ATP-dependent RNA helicase DDX49/DBP8, at 811,508 to 813,410
16041
mRNA_7674: 16042 - SUPERFAMILY--SSF48371, at 813,825 to 816,287
16042
Group
Condition
mRNA
_7670
mRNA
_7671
mRNA
_7672
mRNA
_7673
mRNA
_7674
16038
16039
16040
16041
16042
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-1.2
+0.1
N.D.
-2.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.9
-0.4
N.D.
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.6
+0.3
N.D.
-2.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-1.1
-0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.7
-0.0
N.D.
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
N.D.
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.6
+0.0
-0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.7
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose
-0.9
+0.3
-0.0
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.4
+0.1
N.D.
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
+0.3
+0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+0.2
+0.2
N.D.
+0.1
auxotrophy
Dropout Complete
-0.9
+0.6
+0.3
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.1
+0.0
N.D.
+0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.6
+0.2
N.D.
+0.5
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.1
N.D.
+0.9
growth on oleic acid
YNB Oleic Acid
-0.6
+0.8
+0.0
N.D.
+0.7
growth on ricinoleic acid
YNB Glucose
-0.7
+0.8
+0.1
N.D.
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.5
-0.0
N.D.
+1.3
growth on ypd
YPD
-0.1
+1.0
-0.2
N.D.
+1.0
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