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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16040 and 16041 are separated by 317 nucleotides
16041 and 16042 are separated by 414 nucleotides
16042 and 16043 are separated by 561 nucleotides
16043 and 16044 are separated by 898 nucleotides
mRNA_7672: 16040 - Hypothetical Protein, at 808,491 to 811,190
16040
mRNA_7673: 16041 - K14778 DDX49, DBP8 ATP-dependent RNA helicase DDX49/DBP8, at 811,508 to 813,410
16041
mRNA_7674: 16042 - SUPERFAMILY--SSF48371, at 813,825 to 816,287
16042
mRNA_7675: 16043 - Hypothetical Protein, at 816,849 to 817,556
16043
mRNA_7676: 16044 - Hypothetical Protein, at 818,455 to 819,544
16044
Group
Condition
mRNA
_7672
mRNA
_7673
mRNA
_7674
mRNA
_7675
mRNA
_7676
16040
16041
16042
16043
16044
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-2.2
+0.3
-1.6
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-2.0
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
N.D.
-0.6
-0.6
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
-0.4
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.0
-0.6
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.7
+0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.2
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
-0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.6
+0.0
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
N.D.
+0.3
-0.1
-0.0
auxotrophy
YNB Glucose
-0.0
N.D.
+0.3
+0.2
+0.1
auxotrophy
Dropout Complete
+0.3
N.D.
+0.5
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
+0.3
+0.1
+0.3
growth on ypd
YPD
-0.2
N.D.
+1.0
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.7
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.9
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
+0.8
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.9
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
+0.5
+0.3
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.1
+0.3
+0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
+1.3
-0.1
+0.5
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