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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16043 and 16044 are separated by 898 nucleotides
16044 and 16045 are separated by 495 nucleotides
16045 and 16046 are separated by 351 nucleotides
16046 and 16047 are separated by 151 nucleotides
mRNA_7675: 16043 - Hypothetical Protein, at 816,849 to 817,556
16043
mRNA_7676: 16044 - Hypothetical Protein, at 818,455 to 819,544
16044
mRNA_7677: 16045 - Hypothetical Protein, at 820,040 to 821,034
16045
mRNA_7678: 16046 - K00657 speG diamine N-acetyltransferase, at 821,386 to 822,078
16046
mRNA_7679: 16047 - K12861 BCAS2 pre-mRNA-splicing factor SPF27, at 822,230 to 823,111
16047
Group
Condition
mRNA
_7675
mRNA
_7676
mRNA
_7677
mRNA
_7678
mRNA
_7679
16043
16044
16045
16046
16047
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-1.6
+0.6
-0.3
-3.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
-0.4
+0.6
-2.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.4
-0.2
-0.5
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.0
+0.1
-0.2
-1.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.5
-0.3
-0.8
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
-0.6
+0.5
-0.5
growth on ypd
YPD
+0.0
-0.0
-0.2
-0.4
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.9
-0.1
+0.1
-2.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.3
-0.6
+0.7
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.1
-0.5
+0.7
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
+0.4
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
-0.1
-0.6
+0.3
+0.7
growth on ricinoleic acid
YNB Glucose
-0.1
+0.4
+0.1
-0.1
-0.5
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.2
+0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
-0.1
+0.6
-0.7
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.6
-0.1
-0.2
auxotrophy
Dropout Complete
-0.2
+0.2
+0.3
-0.5
+0.4
growth on oleic acid
YNB Glucose
-0.1
+0.3
+0.1
-0.1
+0.3
auxotrophy
YNB Glucose
+0.2
+0.1
+0.4
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.3
+0.4
-0.5
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.4
+0.3
+0.1
+0.6
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