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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16047 and 16048 are separated by 1004 nucleotides
16048 and 16049 are separated by 217 nucleotides
16049 and 16050 are separated by 244 nucleotides
16050 and 16051 are separated by 265 nucleotides
mRNA_7679: 16047 - K12861 BCAS2 pre-mRNA-splicing factor SPF27, at 822,230 to 823,111
16047
mRNA_7680: 16048 - K11992 ACOT8, PTE acyl-CoA thioesterase 8, at 824,116 to 826,082
16048
mRNA_7681: 16049 - Hypothetical Protein, at 826,300 to 827,705
16049
mRNA_7682: 16050 - Hypothetical Protein, at 827,950 to 829,213
16050
mRNA_7683: 16051 - K02542 MCM6 DNA replication licensing factor MCM6, at 829,479 to 832,868
16051
Group
Condition
mRNA
_7679
mRNA
_7680
mRNA
_7681
mRNA
_7682
mRNA
_7683
16047
16048
16049
16050
16051
ypd buoyancy
40 hrs No Buoyancy Separation
-3.3
-0.0
-0.1
-0.8
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.0
+0.0
-0.2
-0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-2.5
+0.1
-0.2
+0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.0
-0.0
-0.0
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
+0.2
+0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
-0.2
-0.5
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
-0.1
-0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.3
-0.1
-0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.4
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.4
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.0
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.1
+0.4
+0.0
N.D.
growth on ypd
YPD
-0.3
+0.2
+0.4
-0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.2
+0.2
+0.2
N.D.
auxotrophy
YNB Glucose
+0.1
-0.2
-0.1
+0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.3
+0.3
N.D.
auxotrophy
Dropout Complete
+0.4
-0.0
-0.5
+0.6
N.D.
growth on oleic acid
YNB Glucose
+0.3
+0.3
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.3
-0.2
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
-0.1
+0.1
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.1
-0.1
+0.5
N.D.
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