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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16058 and 16059 are separated by 439 nucleotides
16059 and 16060 are separated by 614 nucleotides
16060 and 16061 are separated by 128 nucleotides
16061 and 16062 are separated by 397 nucleotides
mRNA_7690: 16058 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 846,247 to 848,747
16058
mRNA_7691: 16059 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 849,187 to 849,939
16059
mRNA_7692: 16060 - HMMPfam-Cell division control protein 14, SIN component-PF08045, at 850,554 to 851,989
16060
mRNA_7693: 16061 - SUPERFAMILY--SSF57701, at 852,118 to 853,465
16061
mRNA_7694: 16062 - K12581 CNOT7_8, CAF1, POP2 CCR4-NOT transcription complex subunit 7/8, at 853,863 to 855,272
16062
Group
Condition
mRNA
_7690
mRNA
_7691
mRNA
_7692
mRNA
_7693
mRNA
_7694
16058
16059
16060
16061
16062
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
-0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.4
+0.1
-0.5
N.D.
auxotrophy
Dropout Complete
-0.3
-0.0
-0.3
-0.4
N.D.
auxotrophy
YNB Glucose
-0.1
-0.4
+0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.0
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.5
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.1
-0.1
-0.6
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
-0.0
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.1
+0.0
-0.5
N.D.
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.2
-0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
+0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
+0.1
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.4
+0.1
-0.5
N.D.
growth on ypd
YPD
-0.1
-0.2
+0.4
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
+0.2
-0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.0
+0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.1
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.2
+0.3
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.3
+0.3
N.D.
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