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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16062 and 16063 are separated by 658 nucleotides
16063 and 16064 are separated by 1205 nucleotides
16064 and 16065 are separated by 268 nucleotides
16065 and 16066 are separated by 409 nucleotides
mRNA_7694: 16062 - K12581 CNOT7_8, CAF1, POP2 CCR4-NOT transcription complex subunit 7/8, at 853,863 to 855,272
16062
mRNA_7695: 16063 - HMMPfam-Domain of unknown function (DUF1992)-PF09350, at 855,931 to 857,738
16063
mRNA_7696: 16064 - K11269 CTF18, CHL12 chromosome transmission fidelity protein 18, at 858,944 to 862,198
16064
mRNA_7697: 16065 - K00815 TAT tyrosine aminotransferase, at 862,467 to 863,875
16065
mRNA_7698: 16066 - Hypothetical Protein, at 864,285 to 865,332
16066
Group
Condition
mRNA
_7694
mRNA
_7695
mRNA
_7696
mRNA
_7697
mRNA
_7698
16062
16063
16064
16065
16066
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.6
-0.5
-0.9
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.5
+0.1
-0.6
auxotrophy
Dropout Complete
N.D.
+0.2
-0.6
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.6
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
-0.5
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.3
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.2
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.1
+0.0
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.3
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.0
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.5
-0.6
-0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.6
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
-0.6
+0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.0
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
-0.4
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.2
+0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-0.3
-0.0
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
-0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.5
+0.0
-0.0
-0.1
growth on ypd
YPD
N.D.
+0.3
-0.3
+0.1
+0.3
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