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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16064 and 16065 are separated by 268 nucleotides
16065 and 16066 are separated by 409 nucleotides
16066 and 16067 are separated by 190 nucleotides
16067 and 16068 are separated by 3731 nucleotides
mRNA_7696: 16064 - K11269 CTF18, CHL12 chromosome transmission fidelity protein 18, at 858,944 to 862,198
16064
mRNA_7697: 16065 - K00815 TAT tyrosine aminotransferase, at 862,467 to 863,875
16065
mRNA_7698: 16066 - Hypothetical Protein, at 864,285 to 865,332
16066
mRNA_7699: 16067 - K11681 SWR1 helicase SWR1, at 865,523 to 871,227
16067
mRNA_7700: 16068 - HMMPfam-14-3-3 protein-PF00244,PRINTS-14-3-3 protein zeta signature-PR00305,ProSitePatterns-14-3-3 proteins signature 1.-PS00796,SMART-14-3-3 homologues-SM00101,SUPERFAMILY--SSF48445, at 874,959 to 876,595
16068
Group
Condition
mRNA
_7696
mRNA
_7697
mRNA
_7698
mRNA
_7699
mRNA
_7700
16064
16065
16066
16067
16068
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.5
-0.9
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
-0.1
N.D.
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.1
-0.1
N.D.
-0.6
auxotrophy
Dropout Complete
-0.6
-0.0
-0.4
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.1
-0.6
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.2
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.3
+0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Glucose
-0.0
-0.3
-0.2
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
+0.0
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.3
N.D.
+0.4
auxotrophy
YNB Glucose
-0.3
-0.0
-0.3
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.3
N.D.
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.0
+0.2
N.D.
-0.1
growth on ypd
YPD
-0.3
+0.1
+0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.0
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.1
+0.1
N.D.
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
+0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
+0.0
N.D.
+0.5
growth on oleic acid
YNB Glucose
-0.0
-0.2
+0.2
N.D.
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.0
+0.3
N.D.
+0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.2
N.D.
+0.2
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