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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16067 and 16068 are separated by 3731 nucleotides
16068 and 16069 are separated by 602 nucleotides
16069 and 16070 are separated by 446 nucleotides
16070 and 16071 are separated by 335 nucleotides
mRNA_7699: 16067 - K11681 SWR1 helicase SWR1, at 865,523 to 871,227
16067
mRNA_7700: 16068 - HMMPfam-14-3-3 protein-PF00244,PRINTS-14-3-3 protein zeta signature-PR00305,ProSitePatterns-14-3-3 proteins signature 1.-PS00796,SMART-14-3-3 homologues-SM00101,SUPERFAMILY--SSF48445, at 874,959 to 876,595
16068
mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877,198 to 880,311
16069
mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880,758 to 882,745
16070
mRNA_7703: 16071 - KOG2996 Rho guanine nucleotide exchange factor VAV3, at 883,081 to 887,724
16071
Group
Condition
mRNA
_7699
mRNA
_7700
mRNA
_7701
mRNA
_7702
mRNA
_7703
16067
16068
16069
16070
16071
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
-0.2
-0.2
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.2
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.2
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
+0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
+0.1
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.1
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.6
-0.4
-0.5
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.2
-0.4
-0.2
auxotrophy
YNB Glucose
N.D.
+0.3
+0.0
-0.3
-0.2
auxotrophy
Dropout Complete
N.D.
+0.1
+0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
+0.2
-0.2
-0.2
growth on ypd
YPD
N.D.
-0.2
-0.0
+0.5
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.1
-0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.0
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.5
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
-0.0
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.3
+0.2
+0.3
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