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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16069 and 16070 are separated by 446 nucleotides
16070 and 16071 are separated by 335 nucleotides
16071 and 16072 are separated by 286 nucleotides
16072 and 16073 are separated by 181 nucleotides
mRNA_7701: 16069 - SMART-Armadillo/beta-catenin-like repeats-SM00185,SUPERFAMILY--SSF48371, at 877,198 to 880,311
16069
mRNA_7702: 16070 - BLAST endoglucanase [Aspergillus fumigatus Af293], at 880,758 to 882,745
16070
mRNA_7703: 16071 - KOG2996 Rho guanine nucleotide exchange factor VAV3, at 883,081 to 887,724
16071
mRNA_7704: 16072 - K02214 CDC7 cell division control protein 7, at 888,011 to 890,440
16072
mRNA_7705: 16073 - Hypothetical Protein, at 890,622 to 891,361
16073
Group
Condition
mRNA
_7701
mRNA
_7702
mRNA
_7703
mRNA
_7704
mRNA
_7705
16069
16070
16071
16072
16073
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.2
N.D.
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.1
-0.7
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
+0.0
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
-0.2
+0.2
N.D.
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
-0.4
N.D.
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.2
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose
+0.0
-0.3
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.2
-0.7
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.1
-0.2
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
-0.2
-0.0
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
-0.0
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.4
-0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
-0.2
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
N.D.
-0.2
growth on oleic acid
YNB Glucose
+0.0
-0.0
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
-0.1
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.2
-0.2
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
-0.2
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.2
N.D.
-0.2
growth on ypd
YPD
-0.0
+0.5
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
+0.3
N.D.
+0.1
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