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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16072 and 16073 are separated by 181 nucleotides
16073 and 16074 are separated by 1192 nucleotides
16074 and 16075 are separated by 1717 nucleotides
16075 and 16076 are separated by 343 nucleotides
mRNA_7704: 16072 - K02214 CDC7 cell division control protein 7, at 888,011 to 890,440
16072
mRNA_7705: 16073 - Hypothetical Protein, at 890,622 to 891,361
16073
mRNA_7706: 16074 - Hypothetical Protein, at 892,554 to 894,176
16074
mRNA_7707: 16075 - HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098, at 895,894 to 899,712
16075
mRNA_7708: 16076 - Hypothetical Protein, at 900,056 to 901,517
16076
Group
Condition
mRNA
_7704
mRNA
_7705
mRNA
_7706
mRNA
_7707
mRNA
_7708
16072
16073
16074
16075
16076
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.1
+0.4
-0.3
+0.1
auxotrophy
Dropout Complete
N.D.
-0.0
-0.4
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
-0.6
+0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.3
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.3
-0.6
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.0
+0.1
+0.6
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.4
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.6
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.6
-0.0
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.4
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.5
-0.3
+0.0
auxotrophy
YNB Glucose
N.D.
+0.0
-0.3
+0.0
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.1
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.2
+0.3
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
-0.2
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-0.4
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.1
+0.1
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.3
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
+0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
-0.0
+0.4
+0.2
growth on ypd
YPD
N.D.
+0.2
+0.4
+0.2
+0.1
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