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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16073 and 16074 are separated by 1192 nucleotides
16074 and 16075 are separated by 1717 nucleotides
16075 and 16076 are separated by 343 nucleotides
16076 and 16077 are separated by 689 nucleotides
mRNA_7705: 16073 - Hypothetical Protein, at 890,622 to 891,361
16073
mRNA_7706: 16074 - Hypothetical Protein, at 892,554 to 894,176
16074
mRNA_7707: 16075 - HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098, at 895,894 to 899,712
16075
mRNA_7708: 16076 - Hypothetical Protein, at 900,056 to 901,517
16076
mRNA_7709: 16077 - K19877 CHS5 chitin biosynthesis protein CHS5, at 902,207 to 904,253
16077
Group
Condition
mRNA
_7705
mRNA
_7706
mRNA
_7707
mRNA
_7708
mRNA
_7709
16073
16074
16075
16076
16077
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
-0.4
+0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.6
+0.0
+0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.4
-0.3
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.6
-0.0
+0.2
-0.4
auxotrophy
Dropout Complete
-0.0
-0.4
-0.2
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.6
+0.0
-0.2
auxotrophy
YNB Glucose
+0.0
-0.3
+0.0
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.5
-0.3
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.6
-0.0
+0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.4
+0.1
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
+0.1
+0.6
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
+0.3
+0.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.2
-0.1
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.4
-0.2
+0.4
-0.2
growth on oleic acid
YNB Glucose
+0.1
-0.3
+0.2
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
+0.4
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.4
+0.3
+0.1
+0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.1
+0.3
+0.2
+0.3
growth on ypd
YPD
+0.2
+0.4
+0.2
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
+0.1
+0.2
+0.6
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