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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16075 and 16076 are separated by 343 nucleotides
16076 and 16077 are separated by 689 nucleotides
16077 and 16078 are separated by 174 nucleotides
16078 and 16079 are separated by 88 nucleotides
mRNA_7707: 16075 - HMMPfam-PAZ domain-PF02170,HMMPfam-Piwi domain-PF02171,HMMPfam-Domain of unknown function (DUF1785)-PF08699,ProSiteProfiles-PAZ domain profile.-PS50821,ProSiteProfiles-Piwi domain profile.-PS50822,SMART--SM00950,SUPERFAMILY--SSF101690,SUPERFAMILY--SSF53098, at 895,894 to 899,712
16075
mRNA_7708: 16076 - Hypothetical Protein, at 900,056 to 901,517
16076
mRNA_7709: 16077 - K19877 CHS5 chitin biosynthesis protein CHS5, at 902,207 to 904,253
16077
mRNA_7710: 16078 - K06067 HDAC1_2 histone deacetylase 1/2, at 904,428 to 906,811
16078
mRNA_7711: 16079 - Hypothetical Protein, at 906,900 to 908,235
16079
Group
Condition
mRNA
_7707
mRNA
_7708
mRNA
_7709
mRNA
_7710
mRNA
_7711
16075
16076
16077
16078
16079
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.0
-0.4
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.0
-0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
-0.2
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.3
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-0.4
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.4
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
-0.2
N.D.
+0.4
auxotrophy
Dropout Complete
-0.2
+0.1
-0.0
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose
+0.0
+0.3
-0.3
N.D.
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.2
-0.1
N.D.
+0.1
growth on ypd
YPD
+0.2
+0.1
+0.0
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
-0.1
N.D.
+0.5
growth on oleic acid
YNB Glucose
+0.2
+0.3
+0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.0
+0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
+0.7
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.6
N.D.
+0.2
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