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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16080 and 16081 are separated by 112 nucleotides
16081 and 16082 are separated by 464 nucleotides
16082 and 16083 are separated by 700 nucleotides
16083 and 16084 are separated by 177 nucleotides
mRNA_7712: 16080 - K12586 RRP43, EXOSC8, OIP2 exosome complex component RRP43, at 908,335 to 909,649
16080
mRNA_7713: 16081 - Hypothetical Protein, at 909,762 to 910,518
16081
mRNA_7714: 16082 - Hypothetical Protein, at 910,983 to 911,507
16082
mRNA_7715: 16083 - K05906 PCYOX1, FCLY prenylcysteine oxidase / farnesylcysteine lyase, at 912,208 to 914,199
16083
mRNA_7716: 16084 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 914,377 to 916,926
16084
Group
Condition
mRNA
_7712
mRNA
_7713
mRNA
_7714
mRNA
_7715
mRNA
_7716
16080
16081
16082
16083
16084
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.8
+0.0
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.8
+0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-1.4
+0.3
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.4
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.3
-0.0
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.4
-0.0
-0.0
growth on ypd
YPD
N.D.
N.D.
+0.3
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
+0.3
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.7
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-0.0
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
+0.6
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
+0.6
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
+0.4
+0.6
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.4
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.6
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+1.4
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+1.9
+0.4
+0.1
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