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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16086 and 16087 are separated by 319 nucleotides
16087 and 16088 are separated by 83 nucleotides
16088 and 16089 are separated by 112 nucleotides
16089 and 16090 are separated by 240 nucleotides
mRNA_7718: 16086 - K08516 YKT6 synaptobrevin homolog YKT6, at 920,015 to 921,107
16086
mRNA_7719: 16087 - Hypothetical Protein, at 921,427 to 923,879
16087
mRNA_7720: 16088 - K03177 truB, PUS4, TRUB1 tRNA pseudouridine55 synthase, at 923,963 to 925,405
16088
mRNA_7721: 16089 - K19998 SCFD1, SLY1 sec1 family domain-containing protein 1, at 925,518 to 928,664
16089
mRNA_7722: 16090 - BLAST iQ calmodulin-binding motif protein [Moesziomyces..., at 928,905 to 930,722
16090
Group
Condition
mRNA
_7718
mRNA
_7719
mRNA
_7720
mRNA
_7721
mRNA
_7722
16086
16087
16088
16089
16090
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.4
N.D.
-0.2
growth on ypd
YPD
N.D.
-0.0
-0.5
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
-0.8
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.2
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
+0.0
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.3
N.D.
+0.1
auxotrophy
Dropout Complete
N.D.
-0.0
-0.0
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
+0.1
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
+0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
+0.3
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
+0.1
N.D.
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.2
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.3
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
-0.0
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.2
N.D.
+0.4
auxotrophy
YNB Glucose
N.D.
+0.4
+0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
+0.2
N.D.
+0.3
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