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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16088 and 16089 are separated by 112 nucleotides
16089 and 16090 are separated by 240 nucleotides
16090 and 16091 are separated by 393 nucleotides
16091 and 16092 are separated by 246 nucleotides
mRNA_7720: 16088 - K03177 truB, PUS4, TRUB1 tRNA pseudouridine55 synthase, at 923,963 to 925,405
16088
mRNA_7721: 16089 - K19998 SCFD1, SLY1 sec1 family domain-containing protein 1, at 925,518 to 928,664
16089
mRNA_7722: 16090 - BLAST iQ calmodulin-binding motif protein [Moesziomyces..., at 928,905 to 930,722
16090
mRNA_7723: 16091 - HMMPfam-Domain of unknown function (DUF427)-PF04248, at 931,116 to 931,814
16091
mRNA_7724: 16092 - KOG2644 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes, at 932,061 to 933,452
16092
Group
Condition
mRNA
_7720
mRNA
_7721
mRNA
_7722
mRNA
_7723
mRNA
_7724
16088
16089
16090
16091
16092
growth on ypd
YPD
-0.5
N.D.
+0.1
-0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
-0.2
-0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.1
-0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
N.D.
+0.1
+0.3
-0.1
auxotrophy
Dropout Complete
-0.0
N.D.
+0.0
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.1
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.4
-0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.0
-0.4
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.3
-0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
N.D.
+0.2
-0.6
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose
+0.0
N.D.
+0.0
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.1
+0.1
+0.3
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.1
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.1
+0.5
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.3
+0.4
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.0
+0.1
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
N.D.
+0.1
+0.8
+0.5
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.1
+0.4
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-0.1
+0.8
+0.1
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mRNA_7720
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