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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16089 and 16090 are separated by 240 nucleotides
16090 and 16091 are separated by 393 nucleotides
16091 and 16092 are separated by 246 nucleotides
16092 and 16093 are separated by 408 nucleotides
mRNA_7721: 16089 - K19998 SCFD1, SLY1 sec1 family domain-containing protein 1, at 925,518 to 928,664
16089
mRNA_7722: 16090 - BLAST iQ calmodulin-binding motif protein [Moesziomyces..., at 928,905 to 930,722
16090
mRNA_7723: 16091 - HMMPfam-Domain of unknown function (DUF427)-PF04248, at 931,116 to 931,814
16091
mRNA_7724: 16092 - KOG2644 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes, at 932,061 to 933,452
16092
mRNA_7725: 16093 - Hypothetical Protein, at 933,861 to 936,370
16093
Group
Condition
mRNA
_7721
mRNA
_7722
mRNA
_7723
mRNA
_7724
mRNA
_7725
16089
16090
16091
16092
16093
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
-0.5
-0.1
-0.3
growth on ypd
YPD
N.D.
+0.1
-0.3
-0.5
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.6
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.0
-0.4
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.1
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.6
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.3
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.5
-0.3
-0.3
auxotrophy
YNB Glucose
N.D.
+0.0
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.4
+0.1
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.3
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.1
+0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.0
+0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.4
+0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.8
+0.1
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.4
+0.5
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
+0.1
+0.7
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.4
+0.0
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.8
+0.5
-0.0
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mRNA_7723
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