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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16092 and 16093 are separated by 408 nucleotides
16093 and 16094 are separated by 984 nucleotides
16094 and 16095 are separated by 374 nucleotides
16095 and 16096 are separated by 981 nucleotides
mRNA_7724: 16092 - KOG2644 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes, at 932,061 to 933,452
16092
mRNA_7725: 16093 - Hypothetical Protein, at 933,861 to 936,370
16093
mRNA_7726: 16094 - KOG1231 Proteins containing the FAD binding domain, at 937,355 to 939,752
16094
mRNA_7727: 16095 - K13354 SLC25A17, PMP34 solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17, at 940,127 to 941,686
16095
mRNA_7728: 16096 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 942,668 to 943,581
16096
Group
Condition
mRNA
_7724
mRNA
_7725
mRNA
_7726
mRNA
_7727
mRNA
_7728
16092
16093
16094
16095
16096
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.1
-0.4
N.D.
growth on ypd
YPD
-0.5
-0.0
+0.2
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.3
+0.1
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
-0.3
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
+0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
+0.1
-0.4
N.D.
auxotrophy
Dropout Complete
+0.2
-0.3
-0.2
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.1
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+0.1
+0.4
N.D.
auxotrophy
YNB Glucose
+0.2
-0.2
-0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.0
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.0
-0.0
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.7
-0.4
+0.2
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
-0.1
+0.4
N.D.
growth on ricinoleic acid
YNB Glucose
+0.5
-0.3
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
+0.5
-0.0
N.D.
growth on oleic acid
YNB Glucose
+0.3
-0.2
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
-0.1
+0.2
N.D.
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