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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16093 and 16094 are separated by 984 nucleotides
16094 and 16095 are separated by 374 nucleotides
16095 and 16096 are separated by 981 nucleotides
16096 and 16097 are separated by 867 nucleotides
mRNA_7725: 16093 - Hypothetical Protein, at 933,861 to 936,370
16093
mRNA_7726: 16094 - KOG1231 Proteins containing the FAD binding domain, at 937,355 to 939,752
16094
mRNA_7727: 16095 - K13354 SLC25A17, PMP34 solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17, at 940,127 to 941,686
16095
mRNA_7728: 16096 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 942,668 to 943,581
16096
mRNA_7729: 16097 - KOG0537 Cytochrome b5, at 944,449 to 944,897
16097
Group
Condition
mRNA
_7725
mRNA
_7726
mRNA
_7727
mRNA
_7728
mRNA
_7729
16093
16094
16095
16096
16097
growth on oleic acid
YNB Oleic Acid
-0.3
-0.1
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.1
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
-0.4
N.D.
N.D.
growth on ypd
YPD
-0.0
+0.2
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.2
-0.0
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
-0.2
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.0
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
-0.2
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
+0.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.2
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
+0.4
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.2
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.5
-0.0
N.D.
N.D.
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