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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16100 and 16101 are separated by 682 nucleotides
16101 and 16102 are separated by 929 nucleotides
16102 and 16103 are separated by 215 nucleotides
16103 and 16104 are separated by 1353 nucleotides
mRNA_7732: 16100 - Hypothetical Protein, at 949,137 to 950,100
16100
mRNA_7733: 16101 - HMMPfam-DinB superfamily-PF12867, at 950,783 to 951,558
16101
mRNA_7734: 16102 - Hypothetical Protein, at 952,488 to 953,987
16102
mRNA_7735: 16103 - Hypothetical Protein, at 954,203 to 954,907
16103
mRNA_7736: 16104 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 956,261 to 958,930
16104
Group
Condition
mRNA
_7732
mRNA
_7733
mRNA
_7734
mRNA
_7735
mRNA
_7736
16100
16101
16102
16103
16104
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-1.7
-0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
-0.4
+0.0
-1.0
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.6
-0.7
+0.0
-0.6
N.D.
auxotrophy
Dropout Complete
+0.3
-0.6
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose
+0.3
-0.2
+0.1
-0.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.3
-0.5
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.3
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.3
-0.0
N.D.
growth on ypd
YPD
+0.6
-0.3
-0.2
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.6
-0.2
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.5
-0.2
+0.5
N.D.
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.1
-0.0
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.5
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.6
+0.4
-0.1
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.8
+0.2
-0.0
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.9
+0.2
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.7
+0.5
+0.3
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.6
-0.2
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.7
-0.2
+0.2
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.1
+0.3
+0.5
N.D.
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