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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16103 and 16104 are separated by 1353 nucleotides
16104 and 16105 are separated by 583 nucleotides
16105 and 16106 are separated by 148 nucleotides
16106 and 16107 are separated by 276 nucleotides
mRNA_7735: 16103 - Hypothetical Protein, at 954,203 to 954,907
16103
mRNA_7736: 16104 - HMMPfam-Glyoxal oxidase N-terminus-PF07250,HMMPfam-Domain of unknown function (DUF1929)-PF09118,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF81296, at 956,261 to 958,930
16104
mRNA_7737: 16105 - HMMPfam-Antibiotic biosynthesis monooxygenase-PF03992,SUPERFAMILY--SSF54909, at 959,514 to 960,315
16105
mRNA_7738: 16106 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097, at 960,464 to 961,733
16106
mRNA_7739: 16107 - K20476 RIC1 RAB6A-GEF complex partner protein 1, at 962,010 to 966,625
16107
Group
Condition
mRNA
_7735
mRNA
_7736
mRNA
_7737
mRNA
_7738
mRNA
_7739
16103
16104
16105
16106
16107
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.0
+0.5
-2.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-0.3
+0.7
-2.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-1.9
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.0
N.D.
-0.2
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.6
N.D.
-0.3
+0.1
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
N.D.
+0.6
+0.1
-1.7
auxotrophy
YNB Glucose
-0.5
N.D.
-0.3
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
-0.5
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
+0.6
-0.1
-1.1
growth on ypd
YPD
+0.0
N.D.
-0.9
+0.7
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
+1.1
-0.2
-1.6
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.5
-0.5
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
+0.3
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.6
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+1.2
+0.6
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.9
+0.4
-0.6
growth on oleic acid
YNB Glucose
+0.5
N.D.
+0.5
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
N.D.
+1.1
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.7
+0.6
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+1.1
+0.8
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
+0.7
+0.4
+0.5
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