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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16108 and 16109 are separated by 312 nucleotides
16109 and 16110 are separated by 239 nucleotides
16110 and 16111 are separated by 441 nucleotides
16111 and 16112 are separated by 285 nucleotides
mRNA_7740: 16108 - HMMPfam-Kinetochore complex Sim4 subunit Fta1-PF13092, at 966,858 to 968,054
16108
mRNA_7741: 16109 - Hypothetical Protein, at 968,367 to 969,216
16109
mRNA_7742: 16110 - KOG3630 Nuclear pore complex, Nup214/CAN component, at 969,456 to 971,369
16110
mRNA_7743: 16111 - K09569 FKBP2 FK506-binding protein 2, at 971,811 to 972,530
16111
mRNA_7744: 16112 - Hypothetical Protein, at 972,816 to 973,446
16112
Group
Condition
mRNA
_7740
mRNA
_7741
mRNA
_7742
mRNA
_7743
mRNA
_7744
16108
16109
16110
16111
16112
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.2
N.D.
-1.0
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.1
N.D.
+0.1
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
N.D.
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
N.D.
-0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.5
N.D.
-0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.6
N.D.
-0.4
-0.7
auxotrophy
Dropout Complete
+0.0
+0.7
N.D.
-0.5
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
N.D.
-0.3
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
N.D.
+0.2
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.4
N.D.
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.7
N.D.
+0.5
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.8
N.D.
+0.7
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.3
N.D.
-0.1
+0.8
auxotrophy
YNB Glucose
+0.1
+1.1
N.D.
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.4
N.D.
+0.4
+0.5
growth on oleic acid
YNB Oleic Acid
-0.1
+0.6
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.3
N.D.
+0.5
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.6
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+0.4
N.D.
+0.2
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.5
N.D.
+0.3
+1.6
growth on ypd
YPD
-0.1
+1.0
N.D.
+0.5
+0.3
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