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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
16124 and 16125 are separated by 801 nucleotides
16125 and 16126 are separated by 859 nucleotides
16126 and 16127 are separated by 194 nucleotides
16127 and 16128 are separated by 1384 nucleotides
mRNA_7756: 16124 - Hypothetical Protein, at 995,433 to 996,390
16124
mRNA_7757: 16125 - Hypothetical Protein, at 997,192 to 998,453
16125
mRNA_7758: 16126 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 999,313 to 1,000,093
16126
mRNA_7759: 16127 - K11824 AP2A AP-2 complex subunit alpha, at 1,000,288 to 1,003,990
16127
mRNA_7760: 16128 - K05607 AUH methylglutaconyl-CoA hydratase, at 1,005,375 to 1,006,761
16128
Group
Condition
mRNA
_7756
mRNA
_7757
mRNA
_7758
mRNA
_7759
mRNA
_7760
16124
16125
16126
16127
16128
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.6
-0.2
-1.0
growth on ypd
YPD
+0.2
N.D.
-0.1
-1.7
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
+0.0
-1.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.2
-0.7
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
-0.3
-0.5
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.2
-0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.1
-0.8
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
+0.2
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.1
-0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.5
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
+0.3
-0.2
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
+0.4
-0.6
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.1
-0.1
-0.0
auxotrophy
YNB Glucose
+0.1
N.D.
+0.1
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.2
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.2
-0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
+0.2
-0.4
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
+0.3
+0.4
+0.2
auxotrophy
Dropout Complete
+0.1
N.D.
+0.3
+0.2
+0.3
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